eke.specimens 1.1.7 (beta)

ERNE Specimen Management for the EDRN Knowledge Environment

1.1.7 — Like a Boss

• Made compatible with Plone 4.3.
• Made compatible with eea.facetednavigation 5.9
• Work around vocabulary lookup caused by interaction of collection.vdexvocabulary-0.1.1 and Plone-4.3.
• Use z3c.autoinclude
• Fix content-core macros
• Remove obsolete calls to document_relateditems
• Remove monkey-patching and use proper technique to introduce custom faceted render pages
• Alphabetize storage types and collection types
• Use refactored base.cfg

1.1.6 — We'll Never Get Specimens Right

• Added site 593 (CERC at FHCRC with PI Christopher Li)
• Compatible with Plone 4.2.4 and eea.facetednavigation 5.3.
• CA-1087 - Additional Specimen_Stored_Code Permissible Values
• CA-1084 - Modifications to Specimen Tab

1.1.5 — Opened

• CA-1008 - Add an open text search to specimens

1.1.4 — Upgrades

• Make compatible with Plone 4.1.5 and eea.facetednavigation 4.5.

1.1.3 — Third Time's the Charm

This release addresses:

• CA-845 - Make "Specimen Collections" compute total specimens
• CA-844 - Combine PRoBE and Reference Sets in the "Specimens" tab
• Numerous enhancements to the handling of specimens, including:
  • Generic specimen sets to treat PRoBE and Reference equivalently
  • File and link attachment to generic specimen sets
  • Representation of sets of specimens from inactive ERNE sites
  • Co-habitation of inactive and active ERNE sets
  • Multiple storage types for inactive ERNE sets
  • Open-ended generic reference sets
  • Separation of case and control populations into subsets
• CA-926 - Improve Specimen Reference Sets based on feedback from Jackie Dahlgren, including:
  • Dropping the specimen count on the faceted Specimens tab for reference sets
  • Drop the specimen count on the Reference Set views
  • On the faceted Specimens tab, sort reference sets specially: alphabetically, except for Lung, which should be in the order: Set A Rapid, Set A Panel Pre-Validation, Set A Phase II Validation, Set B, Set C
  • Moving set-specific from the Resources tab to their matching Reference Sets
  • You can mark generic sets as PRoBE sets.
• CA-938 - Add specimen contact information to detail page of specimen sets
• CA-937 - Add pagination to Specimen tab list of specimen sets on right

1.1.2 — Dawn's Out, William's In

This release handles:

• CA-832 - Correct NYU Specimen Site, PI and Organ

1.1.1 — Thus Spake Christos

This release addresses the following:

• CA-823 - Modify eke.specimens per Christos's commentary
• CA-825 - Evening telecon

1.1.0 — Strong Simplification

This release simplifies specimens so that only the common attributes between Specimen Reference Sets, PRoBE, and ERNE Specimens are represented.

1.0.1 — Upgrade Cleanup

This release updates the GenericSetup profile to 4, provides upgrade steps to that profile, and makes the testing and development harness depend on "trunk" level of other eggs instead of on released versions of those eggs. It also takes advantage of factored out common testing setup.

1.0.0 — Plone 4

This release makes eke.specimens compatible with Plone 4.

0.0.3 — NYU

This release tackles the following:

• If an ERNE site is down and the ERNE cache returns an HTTP 500 error, don't abort the entire ingest. Just skip that site and go forward. "Keep calm and carry on."

0.0.2 — A Mixed Bag

This release addresses the following issue:

• CA-698 - "Structural" objects appear in searches

0.0.1 — Goodbye, Peter Lin

This time around, the EKE specimen package provides direct display of ERNE specimen data without having to delegate to the ERNE UI web application. (There is no corresponding issue in the issue tracker for this new feature; or if there is, the issue tracker is down as I write this and can't confirm.)

This release also addresses the following issues:

• CA-683 — Counts are off on specimen search
• CA-685 — Specimen Tab search results returns records for the same search summary more than one time (should be grouped together)

0.0.0 — Unreleased

Initial release into beta.